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Original article

June 28, 2023


Bayesian bi-level variable selection for genome-wide survival study
Eunjee Lee, Joseph G. Ibrahim, Hongtu Zhu,
Genomics Inform. 2023;21(3):e28.

Mild cognitive impairment (MCI) is a clinical syndrome characterized by the onset and evolution of cognitive impairments, often considered a transitional stage to Alzheimer’s disease (AD). The genetic traits of...

Original article

September 27, 2023


Lack of association between the VEGFA gene polymorphisms and preterm birth in Korean women
Yue Shi, Hyung Jun Kim, Seong Yong Kim, Ga Eun Kim, Han Jun Jin
Genomics Inform. 2023;21(3):e29.

Preterm birth (PTB), a pregnancy-related disease, is defined as a birth before 37 weeks of gestation. It is a major cause of maternal mortality and morbidity worldwide, and its incidence...

Original article

September 27, 2023


In-silico and structure-based assessment to evaluate pathogenicity of missense mutations associated with non-small cell lung cancer identified in the Eph-ephrin class of proteins
Shubhashish Chakraborty, Reshita Baruah, Neha Mishra, Ashok K Varma
Genomics Inform. 2023;21(3):e30.

Ephs belong to the largest family of receptor tyrosine kinase and are highly conserved both sequentially and structurally. The structural organization of Eph is similar to other receptor tyrosine kinases;...

Original article

September 27, 2023


Identification of druggable genes for multiple myeloma based on genomic information
Rahmat Dani Satria, Lalu Muhammad Irham, Wirawan Adikusuma, Anisa Nova Puspitaningrum, Arief Rahman Afief, Riat El Khair, Abdi Wira Septama
Genomics Inform. 2023;21(3):e31.

Multiple myeloma (MM) is a hematological malignancy. It is widely believed that genetic factors play a significant role in the development of MM, as investigated in numerous studies. However, the...

Original article

September 27, 2023


Structural dynamics insights into the M306L, M306V, and D1024N mutations in Mycobacterium tuberculosis inducing resistance to ethambutol
Yustinus Maladan, Dodi Safari, Arli Aditya Parikesit
Genomics Inform. 2023;21(3):e32.

Resistance to anti-tuberculosis drugs, especially ethambutol (EMB), has been widely reported worldwide. EMB resistance is caused by mutations in the embB gene, which encodes the arabinosyl transferase enzyme. This study...

Original Article

September 27, 2023


Association of CAPN10 gene (rs3842570) polymorphism with the type 2 diabetes mellitus among the population of Noakhali region in Bangladesh: a case-control study
Munia Sultana, Md. Mafizul Islam, Md. Murad Hossain, Md. Anisur Rahman, Shuvo Chandra Das, Dhirendra Nath Barman, Farhana Siddiqi Mitu, Shipan Das Gupta
Genomics Inform. 2023;21(3):e33.

Type 2 diabetes mellitus (T2DM) is a multifactorial, polygenic, and metabolically complicated disease. A large number of genes are responsible for the biogenesis of T2DM and calpain10 (CAPN10) is one...

Original article

September 27, 2023


Whole genomic sequencing of Staphylococcus aureus strain RMI-014804 isolated from pulmonary patient sputum via next-generation sequencing technology
Ayesha Wisal, Asad Ullah, Waheed Anwar, Carlos M. Morel, Syed Shah Hassan
Genomics Inform. 2023;21(3):e34.

Nosocomial infections, commonly referred to as healthcare-associated infections, are illnesses that patients get while hospitalized and are typically either not yet manifest or may develop. One of the most prevalent...

Original article

September 27, 2023


Whole genome sequence analyses of thermotolerant Bacillus sp. isolates from food
Phornphan Sornchuer, Kritsakorn Saninjuk, Pholawat Tingpej
Genomics Inform. 2023;21(3):e35.

The Bacillus cereus group, also known as B. cereus sensu lato (B. cereus s.l.), is composed of various Bacillus species, some of which can cause diarrheal or emetic food poisoning....

Original article

September 27, 2023


A genome‑wide approach to the systematic and comprehensive analysis of LIM gene family in sorghum (Sorghum bicolor L.)
Md. Abdur Rauf Sarkar, Salim Sarkar, Md. Shohelul Islam, Fatema Tuz Zohra, Shaikh Mizanur Rahman
Genomics Inform. 2023;21(3):e36.

The LIM domain-containing proteins are dominantly found in plants and play a significant role in various biological processes such as gene transcription as well as actin cytoskeletal organization. Nevertheless, genome-wide...

Original article

September 27, 2023


Identifying pathogenic variants related to systemic lupus erythematosus by integrating genomic databases and a bioinformatic approach
Ratih Dewi Yudhani, Dyonisa Nasirochmi Pakha, Suyatmi Suyatmi, Lalu Muhammad Irham
Genomics Inform. 2023;21(3):e37.

Systemic lupus erythematosus (SLE) is an inflammatory-autoimmune disease with a complex multi-organ pathogenesis, and it is known to be associated with significant morbidity and mortality. Various genetic, immunological, endocrine, and...

Original article

September 27, 2023


Identification of novel potential drugs and miRNAs biomarkers in lung cancer based on gene co-expression network analysis
Sara Hajipour, Sayed Mostafa Hosseini, Shiva Irani, Mahmood Tavallaie
Genomics Inform. 2023;21(3):e38.

Non–small cell lung cancer (NSCLC) is an important cause of cancer-associated deaths worldwide. Therefore, the exact molecular mechanisms of NSCLC are unidentified. The present investigation aims to identify the miRNAs...

Original article

September 27, 2023


Overcoming taxonomic challenges in DNA barcoding for improvement of identification and preservation of clariid catfish species
Piangjai Chalermwong, Thitipong Panthum, Pish Wattanadilokcahtkun, Nattakan Ariyaraphong, Thanyapat Thong, Phanitada Srikampa, Worapong Singchat, Syed Farhan Ahmad, Kantika Noito, Ryan Rasoarahona, et al.
Genomics Inform. 2023;21(3):e39.

DNA barcoding without assessing reliability and validity causes taxonomic errors of species identification, which is responsible for disruptions of their conservation and aquaculture industry. Although DNA barcoding facilitates molecular identification...

Original article

July 31, 2023


A streamlined pipeline based on HmmUFOtu for microbial community profiling using 16S rRNA amplicon sequencing
Hyeonwoo Kim, Jiwon Kim, Ji Won Choi, Kwang-Sung Ahn, Dong-Il Park, Sangsoo Kim
Genomics Inform. 2023;21(3):e40.

Microbial community profiling using 16S rRNA amplicon sequencing allows for taxonomic characterization of diverse microorganisms. While amplicon sequence variant (ASV) methods are increasingly favored for their fine-grained resolution of sequence...

Original article

September 27, 2023


M Protein from Dengue virus oligomerizes to pentameric channel protein: in silico analysis study
Ayesha Zeba, Kanagaraj Sekar, Anjali Ganjiwale
Genomics Inform. 2023;21(3):e41.

The Dengue virus M protein is a 75 amino acid polypeptide with two helical transmembranes (TM). The TM domain oligomerizes to form an ion channel, facilitating viral release from the...

Original article

September 27, 2023


Multi-epitope vaccine against drug-resistant strains of Mycobacterium tuberculosis: a proteome-wide subtraction and immunoinformatics approach
Md Tahsin Khan, Araf Mahmud, Md. Muzahidul Islam, Mst. Sayedatun Nessa Sumaia, Zeaur Rahim, Kamrul Islam, Asif Iqbal
Genomics Inform. 2023;21(3):e42.

Mycobacterium tuberculosis (Mtb) is the causative agent of tuberculosis, one of the most deadly infections in humans. The emergence of multidrug-resistant and extensively drug-resistant Mtb strains presents a global challenge....

Original article

September 14, 2023


Molecular docking Study of Nuciferine as a Tyrosinase Inhibitor and Its Therapeutic Potential for Hyperpigmentation
Veerabhuvaneshwari Veerichetty, Iswaryalakshmi Saravanabavan
Genomics Inform. 2023;21(3):e43.

Melanin is synthesized by tyrosinase to protect the skin from ultraviolet light. However, overproduction and accumulation of melanin can result in hyperpigmentation and skin melanoma. Tyrosinase inhibitors are commonly used...
Current Issue
Volume 21(3); Sep 2023
Bayesian bi-level variable selection for genome-wide survival study
Eunjee Lee, Joseph G. Ibrahim, Hongtu Zhu,
Genomics Inform. 2023;21(3):e28.

Original article

June 28, 2023
Lack of association between the VEGFA gene polymorphisms and preterm birth in Korean women
Yue Shi, Hyung Jun Kim, Seong Yong Kim, Ga Eun Kim, Han Jun Jin
Genomics Inform. 2023;21(3):e29.

Original article

September 27, 2023
In-silico and structure-based assessment to evaluate pathogenicity of missense mutations associated with non-small cell lung cancer identified in the Eph-ephrin class of proteins
Shubhashish Chakraborty, Reshita Baruah, Neha Mishra, Ashok K Varma
Genomics Inform. 2023;21(3):e30.

Original article

September 27, 2023
Identification of druggable genes for multiple myeloma based on genomic information
Rahmat Dani Satria, Lalu Muhammad Irham, Wirawan Adikusuma, Anisa Nova Puspitaningrum, Arief Rahman Afief, Riat El Khair, Abdi Wira Septama
Genomics Inform. 2023;21(3):e31.

Original article

September 27, 2023
Structural dynamics insights into the M306L, M306V, and D1024N mutations in Mycobacterium tuberculosis inducing resistance to ethambutol
Yustinus Maladan, Dodi Safari, Arli Aditya Parikesit
Genomics Inform. 2023;21(3):e32.

Original article

September 27, 2023
Association of CAPN10 gene (rs3842570) polymorphism with the type 2 diabetes mellitus among the population of Noakhali region in Bangladesh: a case-control study
Munia Sultana, Md. Mafizul Islam, Md. Murad Hossain, Md. Anisur Rahman, Shuvo Chandra Das, Dhirendra Nath Barman, Farhana Siddiqi Mitu, Shipan Das Gupta
Genomics Inform. 2023;21(3):e33.

Original Article

September 27, 2023
Whole genomic sequencing of Staphylococcus aureus strain RMI-014804 isolated from pulmonary patient sputum via next-generation sequencing technology
Ayesha Wisal, Asad Ullah, Waheed Anwar, Carlos M. Morel, Syed Shah Hassan
Genomics Inform. 2023;21(3):e34.

Original article

September 27, 2023
Whole genome sequence analyses of thermotolerant Bacillus sp. isolates from food
Phornphan Sornchuer, Kritsakorn Saninjuk, Pholawat Tingpej
Genomics Inform. 2023;21(3):e35.

Original article

September 27, 2023
A genome‑wide approach to the systematic and comprehensive analysis of LIM gene family in sorghum (Sorghum bicolor L.)
Md. Abdur Rauf Sarkar, Salim Sarkar, Md. Shohelul Islam, Fatema Tuz Zohra, Shaikh Mizanur Rahman
Genomics Inform. 2023;21(3):e36.

Original article

September 27, 2023
Identifying pathogenic variants related to systemic lupus erythematosus by integrating genomic databases and a bioinformatic approach
Ratih Dewi Yudhani, Dyonisa Nasirochmi Pakha, Suyatmi Suyatmi, Lalu Muhammad Irham
Genomics Inform. 2023;21(3):e37.

Original article

September 27, 2023
Identification of novel potential drugs and miRNAs biomarkers in lung cancer based on gene co-expression network analysis
Sara Hajipour, Sayed Mostafa Hosseini, Shiva Irani, Mahmood Tavallaie
Genomics Inform. 2023;21(3):e38.

Original article

September 27, 2023
Overcoming taxonomic challenges in DNA barcoding for improvement of identification and preservation of clariid catfish species
Piangjai Chalermwong, Thitipong Panthum, Pish Wattanadilokcahtkun, Nattakan Ariyaraphong, Thanyapat Thong, Phanitada Srikampa, Worapong Singchat, Syed Farhan Ahmad, Kantika Noito, Ryan Rasoarahona, et al.
Genomics Inform. 2023;21(3):e39.

Original article

September 27, 2023
A streamlined pipeline based on HmmUFOtu for microbial community profiling using 16S rRNA amplicon sequencing
Hyeonwoo Kim, Jiwon Kim, Ji Won Choi, Kwang-Sung Ahn, Dong-Il Park, Sangsoo Kim
Genomics Inform. 2023;21(3):e40.

Original article

July 31, 2023
M Protein from Dengue virus oligomerizes to pentameric channel protein: in silico analysis study
Ayesha Zeba, Kanagaraj Sekar, Anjali Ganjiwale
Genomics Inform. 2023;21(3):e41.

Original article

September 27, 2023
Multi-epitope vaccine against drug-resistant strains of Mycobacterium tuberculosis: a proteome-wide subtraction and immunoinformatics approach
Md Tahsin Khan, Araf Mahmud, Md. Muzahidul Islam, Mst. Sayedatun Nessa Sumaia, Zeaur Rahim, Kamrul Islam, Asif Iqbal
Genomics Inform. 2023;21(3):e42.

Original article

September 27, 2023
Molecular docking Study of Nuciferine as a Tyrosinase Inhibitor and Its Therapeutic Potential for Hyperpigmentation
Veerabhuvaneshwari Veerichetty, Iswaryalakshmi Saravanabavan
Genomics Inform. 2023;21(3):e43.

Original article

September 14, 2023

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Multi-epitope vaccine against drug-resistant strains of Mycobacterium tuberculosis: a proteome-wide subtraction and immunoinformatics approach Md Tahsin Khan, Araf Mahmud, Md. Muzahidul Islam, Mst. Sayedatun Nessa Sumaia, Zeaur Rahim, Kamrul Islam, Asif Iqbal Genomics Inform. 2023;21(3):e42. Sk Injamamul Islam, Moslema Jahan Mou, Saloa Sanjida, Muhammad Tariq, Saad Nasir, Sarower Mahfuj Genomics Inform. 2022;20(1):e11. Cited By 7
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