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Review article

December 30, 2022


Overview of frequent pattern mining
Jurg Ott, Taesung Park
Genomics Inform. 2022;20(4):e39.

Various methods of frequent pattern mining have been applied to genetic problems, specifically, to the combined association of two genotypes (a genotype pattern, or diplotype) at different DNA variants with...

Review article

December 30, 2022


A genetic approach to comprehend the complex and dynamic event of floral development: a review
Jatindra Nath Mohanty, Swayamprabha Sahoo, Puspanjali Mishra
Genomics Inform. 2022;20(4):e40.

The concepts of phylogeny and floral genetics play a crucial role in understanding the origin and diversification of flowers in angiosperms. Angiosperms evolved a great diversity of ways to display...

Original article

December 30, 2022


In silico detection and characterization of novel virulence proteins of the emerging poultry pathogen Gallibacterium anatis
L. G. T. G Rajapaksha, C. W. R Gunasekara, P. S. D Alwis
Genomics Inform. 2022;20(4):e41.

The pathogen Gallibacterium anatis has caused heavy economic losses for commercial poultry farms around the world. However, despite its importance, the functions of its hypothetical proteins (HPs) have been poorly...

Original article

December 30, 2022


The relationship of E-selectin singlenucleotide polymorphisms with breast cancer in Iraqi Arab women
Bilal Fadıl Zakariya, Asmaa M. Salih Almohaidi, Seçil Akıllı Şimşek, Safaa A. Al-Waysi, Wijdan H. Al-Dabbagh, Areege Mustafa Kamal
Genomics Inform. 2022;20(4):e42.

Breast cancer (BC) is a significant threat to female health, with both modifiable andnon-modifiable risk factors. It is essential to monitor patients regularly and to raise population awareness. Increasing research...

Original article

December 30, 2022


The pattern of coding sequences in the chloroplast genome of Atropa belladonna and a comparative analysis with other related genomes in the nightshade family
Satyabrata Sahoo, Ria Rakshit
Genomics Inform. 2022;20(4):e43.

Atropa belladonna is a valuable medicinal plant and a commercial source of tropane alkaloids, which are frequently utilized in therapeutic practice. In this study, bioinformaticmethodologies were used to examine the...

Original article

December 30, 2022


Metagenomic analysis of viral genes integrated in whole genome sequencing data of Thai patients with Brugada syndrome
Suwalak Chitcharoen, Chureerat Phokaew, John Mauleekoonphairoj, Apichai Khongphatthanayothin, Boosamas Sutjaporn, Pharawee Wandee, Yong Poovorawan, Koonlawee Nademanee, Sunchai Payungporn
Genomics Inform. 2022;20(4):e44.

Brugada syndrome (BS) is an autosomal dominant inheritance cardiac arrhythmia disorder associated with sudden death in young adults. Thailand has the highest prevalence of BS worldwide, and over 60% of...

Original article

December 30, 2022


Application of data fusion modeling for the prediction of auxin response elements in Zea mays for food security purposes
Nesrine Sghaier, Rayda Ben Ayed, Ahmed Rebai
Genomics Inform. 2022;20(4):e45.

Food security will be affected by climate change worldwide, particularly in the developingworld, where the most important food products originate from plants. Plants are often exposed to environmental stresses that...

Original article

December 30, 2022


Development of reverse-transcription loop-mediated isothermal amplification assays for point-of-care testing of human influenza virus subtypes H1N1 and H3N2
Ji-Soo Kang, Mi-Ran Seo, Yeun-Jun Chung
Genomics Inform. 2022;20(4):e46.

Influenza A virus (IAV) is the most widespread pathogen causing human respiratory infections. Although polymerase chain reaction (PCR)–based methods are currently the mostcommonly used tools for IAV detection, PCR is...

Original article

December 30, 2022


Antimicrobial resistance in Klebsiella pneumoniae: identification of bacterial DNA adenine methyltransferase as a novel drug target from hypothetical proteins using subtractive genomics
Umairah Natasya Mohd Omeershffudin, Suresh Kumar
Genomics Inform. 2022;20(4):e47.

Klebsiella pneumoniae is a gram-negative bacterium that is known for causing infection innosocomial settings. As reported by the World Health Organization, carbapenem-resistantEnterobacteriaceae, a category that includes K. pneumoniae, are classified...

Original article

December 30, 2022


MP-LASSO chart: a multi-level polar chart for visualizing group LASSO analysis of genomic data
Min Song, Minhyuk Lee, Taesung Park, Mira Park
Genomics Inform. 2022;20(4):e48.

Penalized regression has been widely used in genome-wide association studies for jointanalyses to find genetic associations. Among penalized regression models, the least absolute shrinkage and selection operator (Lasso) method effectively...

Application note

December 30, 2022


Beta-Meta: a meta-analysis application considering heterogeneity among genome-wide association studies
Gyungbu Kim, Yoonsuk Lee, Jeong Ho Park, Dongmin Kim, Wonseok Lee
Genomics Inform. 2022;20(4):e49.

Many packages for a meta-analysis of genome-wide association studies (GWAS) have beendeveloped to discover genetic variants. Although variations across studies must be considered, there are not many currently-accessible packages that...
Current Issue
Volume 20(4); Dec 2022
Editor’s introduction to this issue (G&I 20:4, 2022)
Taesung Park
Genomics Inform. 2022;20(4):e38.

Editorial

December 29, 2022
Overview of frequent pattern mining
Jurg Ott, Taesung Park
Genomics Inform. 2022;20(4):e39.

Review article

December 30, 2022
A genetic approach to comprehend the complex and dynamic event of floral development: a review
Jatindra Nath Mohanty, Swayamprabha Sahoo, Puspanjali Mishra
Genomics Inform. 2022;20(4):e40.

Review article

December 30, 2022
In silico detection and characterization of novel virulence proteins of the emerging poultry pathogen Gallibacterium anatis
L. G. T. G Rajapaksha, C. W. R Gunasekara, P. S. D Alwis
Genomics Inform. 2022;20(4):e41.

Original article

December 30, 2022
The relationship of E-selectin singlenucleotide polymorphisms with breast cancer in Iraqi Arab women
Bilal Fadıl Zakariya, Asmaa M. Salih Almohaidi, Seçil Akıllı Şimşek, Safaa A. Al-Waysi, Wijdan H. Al-Dabbagh, Areege Mustafa Kamal
Genomics Inform. 2022;20(4):e42.

Original article

December 30, 2022
The pattern of coding sequences in the chloroplast genome of Atropa belladonna and a comparative analysis with other related genomes in the nightshade family
Satyabrata Sahoo, Ria Rakshit
Genomics Inform. 2022;20(4):e43.

Original article

December 30, 2022
Metagenomic analysis of viral genes integrated in whole genome sequencing data of Thai patients with Brugada syndrome
Suwalak Chitcharoen, Chureerat Phokaew, John Mauleekoonphairoj, Apichai Khongphatthanayothin, Boosamas Sutjaporn, Pharawee Wandee, Yong Poovorawan, Koonlawee Nademanee, Sunchai Payungporn
Genomics Inform. 2022;20(4):e44.

Original article

December 30, 2022
Application of data fusion modeling for the prediction of auxin response elements in Zea mays for food security purposes
Nesrine Sghaier, Rayda Ben Ayed, Ahmed Rebai
Genomics Inform. 2022;20(4):e45.

Original article

December 30, 2022
Development of reverse-transcription loop-mediated isothermal amplification assays for point-of-care testing of human influenza virus subtypes H1N1 and H3N2
Ji-Soo Kang, Mi-Ran Seo, Yeun-Jun Chung
Genomics Inform. 2022;20(4):e46.

Original article

December 30, 2022
Antimicrobial resistance in Klebsiella pneumoniae: identification of bacterial DNA adenine methyltransferase as a novel drug target from hypothetical proteins using subtractive genomics
Umairah Natasya Mohd Omeershffudin, Suresh Kumar
Genomics Inform. 2022;20(4):e47.

Original article

December 30, 2022
MP-LASSO chart: a multi-level polar chart for visualizing group LASSO analysis of genomic data
Min Song, Minhyuk Lee, Taesung Park, Mira Park
Genomics Inform. 2022;20(4):e48.

Original article

December 30, 2022
Beta-Meta: a meta-analysis application considering heterogeneity among genome-wide association studies
Gyungbu Kim, Yoonsuk Lee, Jeong Ho Park, Dongmin Kim, Wonseok Lee
Genomics Inform. 2022;20(4):e49.

Application note

December 30, 2022

View More

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Metagenomic analysis of viral genes integrated in whole genome sequencing data of Thai patients with Brugada syndrome Suwalak Chitcharoen, Chureerat Phokaew, John Mauleekoonphairoj, Apichai Khongphatthanayothin, Boosamas Sutjaporn, Pharawee Wandee, Yong Poovorawan, Koonlawee Nademanee, Sunchai Payungporn Genomics Inform. 2022;20(4):e44. Sk Injamamul Islam, Moslema Jahan Mou, Saloa Sanjida, Muhammad Tariq, Saad Nasir, Sarower Mahfuj Genomics Inform. 2022;20(1):e11. Cited By 5
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In silico detection and characterization of novel virulence proteins of the emerging poultry pathogen Gallibacterium anatis L. G. T. G Rajapaksha, C. W. R Gunasekara, P. S. D Alwis Genomics Inform. 2022;20(4):e41. A. M. U. B. Mahfuz, A. M. Zubair-Bin-Mahfuj, Dibya Joti Podder Genomics Inform. 2021;19(2):e16. Cited By 3
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