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Review article

March 31, 2022


Experimental development of the epigenomic library construction method to elucidate the epigenetic diversity and causal relationship between epigenome and transcriptome at a single-cell level
Kyunghyuk Park, Min Chul Jeon, Bokyung Kim, Bukyoung Cha, Jong-Il Kim
Genomics Inform. 2022;20(1):e2.

The method of single-cell RNA sequencing has been rapidly developed, and numerous experiments have been conducted over the past decade. Their results allow us to recognize various subpopulations and rare...

Review article

March 31, 2022


Whole-genome sequence analysis through online web interfaces: a review
A. W. A. C. W. R. Gunasekara, L. G. T. G. Rajapaksha, T.L. Tung
Genomics Inform. 2022;20(1):e3.

The recent development of whole-genome sequencing technologies paved the way for understanding the genomes of microorganisms. Every whole-genome sequencing (WGS) project requires a considerable cost and a massive effort to...

Original article

March 31, 2022


Comparison of the copy-neutral loss of heterozygosity identified from whole-exome sequencing data using three different tools
Gang-Taik Lee, Yeun-Jun Chung
Genomics Inform. 2022;20(1):e4.

Loss of heterozygosity (LOH) is a genomic aberration. In some cases, LOH can be generated without changing the copy number, which is called copy-neutral LOH (CN-LOH). CN-LOH frequently occurs in...

Original article

March 31, 2022


Presentation of potential genes and deleterious variants associated with non-syndromic hearing loss: a computational approach
Manisha Ray, Surya Narayan Rath, Saurav Sarkar, Mukund Namdev Sable
Genomics Inform. 2022;20(1):e5.

Non-syndromic hearing loss (NSHL) is a common hereditary disorder. Both clinical and genetic heterogeneity has created many obstacles to understanding the causes of NSHL. The present study has attempted to...

Original article

March 31, 2022


Hypothetical protein predicted to be tumor suppressor: a protein functional analysis
Md. Abdul Kader, Akash Ahammed, Md. Sharif Khan, Sheikh Abdullah Al Ashik, Md. Shariful Islam, Mohammad Uzzal Hossain
Genomics Inform. 2022;20(1):e6.

Litorilituus sediminis is a Gram-negative, aerobic, novel bacterium under the family of Colwelliaceae, has a stunning hypothetical protein containing domain called von Hippel-Lindau that has significant tumor suppressor activity. Therefore,...

Original article

March 31, 2022


2-Methoxy-1,4-naphthoquinone (MNQ) regulates cancer key genes of MAPK, PI3K, and NF-κB pathways in Raji cells
Teck Yew Wong, Subramaniam Menaga, Chi-Ying F. Huang, Siong Hock Anthony Ho, Seng Chiew Gan, Yang Mooi Lim
Genomics Inform. 2022;20(1):e7.

2-Methoxy-1,4-naphthoquinone (MNQ) has been shown to cause cytotoxic towards various cancer cell lines. This study is designed to investigate the regulatory effect of MNQ on the key cancer genes in...

Original article

March 31, 2022


Bayesian mixed models for longitudinal genetic data: theory, concepts, and simulation studies
Wonil Chung, Youngkwang Cho
Genomics Inform. 2022;20(1):e8.

Despite the success of recent genome-wide association studies investigating longitudinal traits, a large fraction of overall heritability remains unexplained. This suggests that some of the missing heritability may be accounted...

Original Article

March 31, 2022


Exploration of errors in variance caused by using the first-order approximation in Mendelian randomization
Hakin Kim, Kunhee Kim, Buhm Han
Genomics Inform. 2022;20(1):e9.

Mendelian randomization (MR) uses genetic variation as a natural experiment to investigate the causal effects of modifiable risk factors (exposures) on outcomes. Two-sample Mendelian randomization (2SMR) is widely used to...

Original article

March 31, 2022


Publication trends of somatic mutation and recombination tests research: a bibliometric analysis (1984‒2020)
Ghada Tagorti, Bülent Kaya
Genomics Inform. 2022;20(1):e10.

Human exposure to pollutants has been on the rise. Thus, researchers have been focused on understanding the effect of these compounds on human health, especially on the genetic information by...

Original article

March 31, 2022


Designing a novel mRNA vaccine against Vibrio harveyi infection in fish: an immunoinformatics approach
Sk Injamamul Islam, Moslema Jahan Mou, Saloa Sanjida, Muhammad Tariq, Saad Nasir, Sarower Mahfuj
Genomics Inform. 2022;20(1):e11.

Vibrio harveyi belongs to the family Vibrionaceae of class Gammaproteobacteria. Around 12 Vibrio species can cause gastroenteritis (gastrointestinal illness) in humans. A large number of bacterial particles can be found...

Genome archive

March 31, 2022


Characterization of the first mitogenomes of the smallest fish in the world, Paedocypris progenetica, from peat swamp of Peninsular Malaysia, Selangor, and Perak
NorJasmin Hussin, Izzati Adilah Azmir, Yuzine Esa, Amirrudin Ahmad, Faezah Mohd Salleh, Puteri Nur Syahzanani Jahari, Kaviarasu Munian, Han Ming Gan
Genomics Inform. 2022;20(1):e12.

The two complete mitochondrial genomes (mitogenomes) of Paedocypris progenetica, the smallest fish in the world which belonged to the Cyprinidae family, were sequenced and assembled. The circular DNA molecules of...

Application note

March 31, 2022


TcellInflamedDetector: an R package to distinguish T cell inflamed tumor types from non–T cell inflamed tumor types
San-Duk Yang, Hyun-Seok Park
Genomics Inform. 2022;20(1):e13.

A major issue in the use of immune checkpoint inhibitors is their lack of efficacy in many patients. Previous studies have reported that the T cell inflamed signature can help...

Application note

March 31, 2022


MPI-GWAS: a supercomputing-aided permutation approach for genomewide association studies
Hyojung Paik, Yongseong Cho, Seong Beom Cho, Oh-Kyoung Kwon
Genomics Inform. 2022;20(1):e14.

Permutation testing is a robust and popular approach for significance testing in genomic research that has the advantage of reducing inflated type 1 error rates; however, its computational cost is...
Current Issue
Volume 20(1); Mar 2022
Editor’s introduction to this issue (G&I 20:1, 2022)
Taesung Park
Genomics Inform. 2022;20(1):e1.

Editorial

March 31, 2022
Experimental development of the epigenomic library construction method to elucidate the epigenetic diversity and causal relationship between epigenome and transcriptome at a single-cell level
Kyunghyuk Park, Min Chul Jeon, Bokyung Kim, Bukyoung Cha, Jong-Il Kim
Genomics Inform. 2022;20(1):e2.

Review article

March 31, 2022
Whole-genome sequence analysis through online web interfaces: a review
A. W. A. C. W. R. Gunasekara, L. G. T. G. Rajapaksha, T.L. Tung
Genomics Inform. 2022;20(1):e3.

Review article

March 31, 2022
Comparison of the copy-neutral loss of heterozygosity identified from whole-exome sequencing data using three different tools
Gang-Taik Lee, Yeun-Jun Chung
Genomics Inform. 2022;20(1):e4.

Original article

March 31, 2022
Presentation of potential genes and deleterious variants associated with non-syndromic hearing loss: a computational approach
Manisha Ray, Surya Narayan Rath, Saurav Sarkar, Mukund Namdev Sable
Genomics Inform. 2022;20(1):e5.

Original article

March 31, 2022
Hypothetical protein predicted to be tumor suppressor: a protein functional analysis
Md. Abdul Kader, Akash Ahammed, Md. Sharif Khan, Sheikh Abdullah Al Ashik, Md. Shariful Islam, Mohammad Uzzal Hossain
Genomics Inform. 2022;20(1):e6.

Original article

March 31, 2022
2-Methoxy-1,4-naphthoquinone (MNQ) regulates cancer key genes of MAPK, PI3K, and NF-κB pathways in Raji cells
Teck Yew Wong, Subramaniam Menaga, Chi-Ying F. Huang, Siong Hock Anthony Ho, Seng Chiew Gan, Yang Mooi Lim
Genomics Inform. 2022;20(1):e7.

Original article

March 31, 2022
Bayesian mixed models for longitudinal genetic data: theory, concepts, and simulation studies
Wonil Chung, Youngkwang Cho
Genomics Inform. 2022;20(1):e8.

Original article

March 31, 2022
Exploration of errors in variance caused by using the first-order approximation in Mendelian randomization
Hakin Kim, Kunhee Kim, Buhm Han
Genomics Inform. 2022;20(1):e9.

Original Article

March 31, 2022
Publication trends of somatic mutation and recombination tests research: a bibliometric analysis (1984‒2020)
Ghada Tagorti, Bülent Kaya
Genomics Inform. 2022;20(1):e10.

Original article

March 31, 2022
Designing a novel mRNA vaccine against Vibrio harveyi infection in fish: an immunoinformatics approach
Sk Injamamul Islam, Moslema Jahan Mou, Saloa Sanjida, Muhammad Tariq, Saad Nasir, Sarower Mahfuj
Genomics Inform. 2022;20(1):e11.

Original article

March 31, 2022
Characterization of the first mitogenomes of the smallest fish in the world, Paedocypris progenetica, from peat swamp of Peninsular Malaysia, Selangor, and Perak
NorJasmin Hussin, Izzati Adilah Azmir, Yuzine Esa, Amirrudin Ahmad, Faezah Mohd Salleh, Puteri Nur Syahzanani Jahari, Kaviarasu Munian, Han Ming Gan
Genomics Inform. 2022;20(1):e12.

Genome archive

March 31, 2022
TcellInflamedDetector: an R package to distinguish T cell inflamed tumor types from non–T cell inflamed tumor types
San-Duk Yang, Hyun-Seok Park
Genomics Inform. 2022;20(1):e13.

Application note

March 31, 2022
MPI-GWAS: a supercomputing-aided permutation approach for genomewide association studies
Hyojung Paik, Yongseong Cho, Seong Beom Cho, Oh-Kyoung Kwon
Genomics Inform. 2022;20(1):e14.

Application note

March 31, 2022

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