Genomics & Informatics

Review article

August 22, 2019

Identification of neoantigens derived from alternative splicing and RNA modification

Jiyeon Park, Yeun-Jun Chung

Genomics Inform. 2019;17(3):e23.

The acquisition of somatic mutations is the most common event in cancer. Neoantigens expressed from genes with mutations acquired during carcinogenesis can be tumor-specific. Since the immune system recognizes tumor-specific...

Review article

September 26, 2019

The interaction between gut microbiome and nutrients on development of human disease through epigenetic mechanisms

Ho-Sun Lee

Genomics Inform. 2019;17(3):e24.

Early environmental exposure is recognized as a key factor for long-term health based on the Developmental Origins of Health and Disease hypothesis. It considers that early-life nutrition is now being...

Mini review

September 27, 2019

Trends in Genomics & Informatics: a statistical review of publications from 2003 to 2018 focusing on the most-studied genes and document clusters

Ji-Hyeon Kim, Hee-Jo Nam, Hyun-Seok Park

Genomics Inform. 2019;17(3):e25.

Genomics & Informatics (NLM title abbreviation: Genomics Inform) is the official journal of the Korea Genome Organization. Herein, we conduct a statistical analysis of the publications of Genomics & Informatics...

Original article

July 23, 2019

FusionScan: accurate prediction of fusion genes from RNA-Seq data

Pora Kim, Ye Eun Jang, Sanghyuk Lee

Genomics Inform. 2019;17(3):e26.

Identification of fusion gene is of prominent importance in cancer research field because of their potential as carcinogenic drivers. RNA sequencing (RNA-Seq) data have been the most useful source for...

Original article

September 16, 2019

De novo transcriptome sequencing and gene expression profiling with/without B-chromosome plants of Lilium amabile

Doori Park, Jong-Hwa Kim, Nam-Soo Kim

Genomics Inform. 2019;17(3):e27.

Supernumerary B chromosomes were found in Lilium amabile (2n = 2x = 24), an endemic Korean lily that grows in the wild throughout the Korean Peninsula. The extra B chromosomes...

Original article

September 18, 2019

Optimization of a microarray for fission yeast

Dong-Uk Kim, Minho Lee, Sangjo Han, Miyoung Nam, Sol Lee, Jaewoong Lee, Jihye Woo, Dongsup Kim, Kwang-Lae Hoe

Genomics Inform. 2019;17(3):e28.

Bar-code (tag) microarrays of yeast gene-deletion collections facilitate the systematic identification of genes required for growth in any condition of interest. Anti-sense strands of amplified bar-codes hybridize with ~10,000 (5,000...

Original article

September 27, 2019

Analysis of differences in human leukocyte antigen between the two Wellcome Trust Case Control Consortium control datasets

Chloe Soohyun Jang, Wanson Choi, Seungho Cook, Buhm Han

Genomics Inform. 2019;17(3):e29.

The Wellcome Trust Case Control Consortium (WTCCC) study was a large genome-wide association study that aimed to identify common variants associated with seven diseases. That study combined two control datasets...

Research communication

September 27, 2019

Deep learning for stage prediction in neuroblastoma using gene expression data

Aron Park, Seungyoon Nam

Genomics Inform. 2019;17(3):e30.

Neuroblastoma is a major cause of cancer death in early childhood, and its timely and correct diagnosis is critical. Gene expression datasets have recently been considered as a powerful tool...

Original article

September 26, 2019

In silico approach to calculate the transcript capacity

Young-Sup Lee, Kyung-Hye Won, Jae-Don Oh, Donghyun Shin

Genomics Inform. 2019;17(3):e31.

We sought the novel concept, transcript capacity (TC) and analyzed TC. Our approach to estimate TC was through an in silico method. TC refers to the capacity that a transcript...

Research communication

September 27, 2019

Comparison of the MGISEQ-2000 and Illumina HiSeq 4000 sequencing platforms for RNA sequencing

Sol A Jeon, Jong Lyul Park, Jong-Hwan Kim, Jeong Hwan Kim, Yong Sung Kim, Jin Cheon Kim, Seon-Young Kim

Genomics Inform. 2019;17(3):e32.

Currently, Illumina sequencers are the globally leading sequencing platform in the next-generation sequencing market. Recently, MGI Tech launched a series of new sequencers, including the MGISEQ-2000, which promise to deliver...

Opinion

September 26, 2019

Direct-to-consumer genetic testing: advantages and pitfalls

Bermseok Oh

Genomics Inform. 2019;17(3):e33.

Opinion

September 27, 2019

Direct-to-consumer genetic testing

Jong-Won Kim

Genomics Inform. 2019;17(3):e34.

Direct-to-consumer (DTC) genetic testing is a controversial issue although Korean Government is considering to expand DTC genetic testing. Preventing the exaggeration and abusing of DTC genetic testing is an important...

Editor’s introduction to this issue (G&I 17:3, 2019) Taesung Park Genomics Inform. 2019;17(3):e22. Editorial September 27, 2019 Full text PubReader ePub PDF	Identification of neoantigens derived from alternative splicing and RNA modification Jiyeon Park, Yeun-Jun Chung Genomics Inform. 2019;17(3):e23. Review article September 27, 2019 Full text PubReader ePub PDF
The interaction between gut microbiome and nutrients on development of human disease through epigenetic mechanisms Ho-Sun Lee Genomics Inform. 2019;17(3):e24. Review article September 27, 2019 Full text PubReader ePub PDF	Trends in Genomics & Informatics: a statistical review of publications from 2003 to 2018 focusing on the most-studied genes and document clusters Ji-Hyeon Kim, Hee-Jo Nam, Hyun-Seok Park Genomics Inform. 2019;17(3):e25. Mini review September 27, 2019 Full text PubReader ePub PDF
FusionScan: accurate prediction of fusion genes from RNA-Seq data Pora Kim, Ye Eun Jang, Sanghyuk Lee Genomics Inform. 2019;17(3):e26. Original article September 27, 2019 Full text PubReader ePub PDF	De novo transcriptome sequencing and gene expression profiling with/without B-chromosome plants of Lilium amabile Doori Park, Jong-Hwa Kim, Nam-Soo Kim Genomics Inform. 2019;17(3):e27. Original article September 27, 2019 Full text PubReader ePub PDF Supplementary Material
Optimization of a microarray for fission yeast Dong-Uk Kim, Minho Lee, Sangjo Han, Miyoung Nam, Sol Lee, Jaewoong Lee, Jihye Woo, Dongsup Kim, Kwang-Lae Hoe Genomics Inform. 2019;17(3):e28. Original article September 27, 2019 Full text PubReader ePub PDF	Analysis of differences in human leukocyte antigen between the two Wellcome Trust Case Control Consortium control datasets Chloe Soohyun Jang, Wanson Choi, Seungho Cook, Buhm Han Genomics Inform. 2019;17(3):e29. Original article September 27, 2019 Full text PubReader ePub PDF Supplementary Material
Deep learning for stage prediction in neuroblastoma using gene expression data Aron Park, Seungyoon Nam Genomics Inform. 2019;17(3):e30. Research communication September 27, 2019 Full text PubReader ePub PDF	In silico approach to calculate the transcript capacity Young-Sup Lee, Kyung-Hye Won, Jae-Don Oh, Donghyun Shin Genomics Inform. 2019;17(3):e31. Original article September 27, 2019 Full text PubReader ePub PDF
Comparison of the MGISEQ-2000 and Illumina HiSeq 4000 sequencing platforms for RNA sequencing Sol A Jeon, Jong Lyul Park, Jong-Hwan Kim, Jeong Hwan Kim, Yong Sung Kim, Jin Cheon Kim, Seon-Young Kim Genomics Inform. 2019;17(3):e32. Research communication September 27, 2019 Full text PubReader ePub PDF Supplementary Material	Direct-to-consumer genetic testing: advantages and pitfalls Bermseok Oh Genomics Inform. 2019;17(3):e33. Opinion September 27, 2019 Full text PubReader ePub PDF
Direct-to-consumer genetic testing Jong-Won Kim Genomics Inform. 2019;17(3):e34. Opinion September 27, 2019 Full text PubReader ePub PDF

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Towards cross-platform interoperability for machine-assisted text annotation Richard Eckart de Castilho, Nancy Ide, Jin-Dong Kim, Jan-Christoph Klie, Keith Suderman Genomics Inform. 2019;17(2):e19.	Use of Graph Database for the Integration of Heterogeneous Biological Data Byoung-Ha Yoon, Seon-Kyu Kim, Seon-Young Kim Genomics Inform. 2017;15(1):19-27. Cited By 10
Comparison of the MGISEQ-2000 and Illumina HiSeq 4000 sequencing platforms for RNA sequencing Sol A Jeon, Jong Lyul Park, Jong-Hwan Kim, Jeong Hwan Kim, Yong Sung Kim, Jin Cheon Kim, Seon-Young Kim Genomics Inform. 2019;17(3):e32.	Evaluation of Digital PCR as a Technique for Monitoring Acute Rejection in Kidney Transplantation Hyeseon Lee, Young-Mi Park, Yu-Mee We, Duck Jong Han, Jung-Woo Seo, Haena Moon, Yu-Ho Lee, Yang-Gyun Kim, Ju-Young Moon, Sang-Ho Lee, et al. Genomics Inform. 2017;15(1):2-10. Cited By 9
The interaction between gut microbiome and nutrients on development of human disease through epigenetic mechanisms Ho-Sun Lee Genomics Inform. 2019;17(3):e24.	A ChIP-Seq Data Analysis Pipeline Based on Bioconductor Packages Seung-Jin Park, Jong-Hwan Kim, Byung-Ha Yoon, Seon-Young Kim Genomics Inform. 2017;15(1):11-18. Cited By 6
Identification of neoantigens derived from alternative splicing and RNA modification Jiyeon Park, Yeun-Jun Chung Genomics Inform. 2019;17(3):e23.	Roles of Oncogenic Long Non-coding RNAs in Cancer Development Hyunhee Do, Wanyeon Kim Genomics Inform. 2018;16(4):e18. Cited By 5
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