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Volume 17(2); Jun 2019

Editorial

Introduction to BLAH5 special issue: recent progress on interoperability of biomedical text mining: Jin-Dong Kim, Kevin Bretonnel Cohen, Nigel Collier, Zhiyong Lu, Fabio Rinaldi; Genomics Inform. 2019;17(2):e12. Published online June 27, 2019; DOI: https://doi.org/10.5808/GI.2019.17.2.e12; Full text PubReader ePub PDF

Application notes

Fully connecting the Observational Health Data Science and Informatics (OHDSI) initiative with the world of linked open data: Juan M. Banda; Genomics Inform. 2019;17(2):e13. Published online June 11, 2019; DOI: https://doi.org/10.5808/GI.2019.17.2.e13
Cited By 6; Full text PubReader ePub PDF

Biotea-2-Bioschemas, facilitating structured markup for semantically annotated scholarly publications: Leyla Garcia, Olga Giraldo, Alexander Garcia, Dietrich Rebholz-Schuhmann; Genomics Inform. 2019;17(2):e14. Published online June 19, 2019; DOI: https://doi.org/10.5808/GI.2019.17.2.e14; Full text PubReader ePub PDF

PharmacoNER Tagger: a deep learning-based tool for automatically finding chemicals and drugs in Spanish medical texts: Jordi Armengol-Estapé, Felipe Soares, Montserrat Marimon, Martin Krallinger; Genomics Inform. 2019;17(2):e15. Published online June 19, 2019; DOI: https://doi.org/10.5808/GI.2019.17.2.e15
Cited By 5; Full text PubReader ePub PDF

Mini review

Resources for assigning MeSH IDs to Japanese medical terms: Yuka Tateisi; Genomics Inform. 2019;17(2):e16. Published online June 27, 2019; DOI: https://doi.org/10.5808/GI.2019.17.2.e16
Cited By 3; Full text PubReader ePub PDF

Application note

OryzaGP: rice gene and protein dataset for named-entity recognition: Pierre Larmande, Huy Do, Yue Wang; Genomics Inform. 2019;17(2):e17. Published online June 26, 2019; DOI: https://doi.org/10.5808/GI.2019.17.2.e17
Cited By 3; Full text PubReader ePub PDF

Mini review

A review of drug knowledge discovery using BioNLP and tensor or matrix decomposition: Mina Gachloo, Yuxing Wang, Jingbo Xia; Genomics Inform. 2019;17(2):e18. Published online June 27, 2019; DOI: https://doi.org/10.5808/GI.2019.17.2.e18
Cited By 10; Full text PubReader ePub PDF

Application notes

Towards cross-platform interoperability for machine-assisted text annotation: Richard Eckart de Castilho, Nancy Ide, Jin-Dong Kim, Jan-Christoph Klie, Keith Suderman; Genomics Inform. 2019;17(2):e19. Published online June 26, 2019; DOI: https://doi.org/10.5808/GI.2019.17.2.e19
Cited By 2; Full text PubReader ePub PDF

Improving the CONTES method for normalizing biomedical text entities with concepts from an ontology with (almost) no training data: Arnaud Ferré, Mouhamadou Ba, Robert Bossy; Genomics Inform. 2019;17(2):e20. Published online June 27, 2019; DOI: https://doi.org/10.5808/GI.2019.17.2.e20
Cited By 2; Full text PubReader ePub PDF

Improving spaCy dependency annotation and PoS tagging web service using independent NER services: Nico Colic, Fabio Rinaldi; Genomics Inform. 2019;17(2):e21. Published online June 24, 2019; DOI: https://doi.org/10.5808/GI.2019.17.2.e21
Cited By 8; Full text PubReader ePub PDF

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