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Genomics Inform > Volume 16(4); 2018 > Article
DOI: https://doi.org/10.5808/GI.2018.16.4.e40    Published online December 28, 2018.
Opinion: Strategy of Semi-Automatically Annotating Full Text Corpus of Genomics & Informatics
Hyun-Seok Park1,2 
1Bioinformatics Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea
2Center for Convergence Research of Advanced Technologies, Ewha Womans University, Seoul 03760, Korea
Corresponding author:  Hyun-Seok Park
Tel: +82-2-3277-3513   Fax: +82-2-3277-2306   Email: neo@ewha.ac.kr
Received: December 13, 2018   Revised: December 20, 2018   Accepted: December 20, 2018
Abstract
There is a community need for an annotated corpus consisting of the full texts of biomedical journal articles. In response to community needs, a prototype version of full text corpus of Genomics & Informatics, called GNI version 1.0 has been recently published, with 499 annotated full text articles available as a corpus resource. However, GNI needs to be updated, as the texts were shallow-parsed, and annotated with several existing parsers. I list issues associated with upgrading annotations, and give opinion on methodology to develop next version of GNI corpus based on a semi-automatic strategy for more linguistically rich corpus annotation.
Keywords: biomedical text mining, corpus, text analytics
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