Genomics Inform Search

CLOSE


Genomics Inform > Volume 5(4); 2007 > Article
FESD II: A Revised Functional Element SNP Database of Human Ethnicities.
Hyun Ju Kim, Il Hyun Kim, Ki Hoon Shin, Young Kyu Park, Hyojin Kang, Young Joo Kim
1Korea Research Institute of Bioscience and Biotechnology, #111 Gwahagno, Yuseong-gu, Daejeon, 305-806, Korea. yjkim8@kribb.re.kr
2Department of Bio and Brain, KAIST, Daejeon 305-701, Korea.
Abstract
The Functional Element SNPs Database (FESD) categorizes functional elements in human genic regions and provides a set of single nucleotide polymorphisms (SNPs) located within each area. Users may select a set of SNPs in specific functional elements with haplotype information and obtain flanking sequences for genotyping. Our previous version of FESD has been improved in several ways. We regenerated all the data in FESD II from recently updated source data such as HapMap, UCSC GoldenPath, dbSNP, OMIM, and TRANSFAC(R). Users can obtain information about tagSNPs and simulate LD blocks for each gene from four ethnicities in the HapMap project on the fly. FESD II employs a Java/JSP web interface for better platform portability and higher speed than PHP in the previous version. As a result, FESD II provides its users with more powerful information about functional element SNPs of human ethnicities.
Keywords: SNP; tagSNP; haplotype; functional elements; LD block; hapMap
TOOLS
Share :
Facebook Twitter Linked In Google+
METRICS Graph View
  • 1,084 View
  • 10 Download
Related articles in GNI


ABOUT
ARTICLE CATEGORY

Browse all articles >

BROWSE ARTICLES
FOR CONTRIBUTORS
Editorial Office
Room No. 806, 193 Mallijae-ro, Jung-gu, Seoul 04501, Korea
Tel: +82-2-558-9394    Fax: +82-2-558-9434    E-mail: kogo3@kogo.or.kr                

Copyright © 2022 by Korea Genome Organization.

Developed in M2PI

Close layer
prev next