| HapAnalyzer: Minimum Haplotype Analysis System for Association Studies. |
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Ho Youl Jung, Jung Sun Park, Yun Ju Park, Young Jin Kim, Kuchan Kimm, In Song Koh |
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Division of Epidemiology and Bioinformatics, National Genome Research Institute, National Institute of Health, 5 Nokbun-dong, Eunpyeng-gu, Seoul, 122-701, Korea. insong@nih.go.kr |
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| Abstract |
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SUMMARY: HapAnalyzer is an analysis system that provides minimum analysis methods for the SNP-based association studies. It consists of Hardy-Weinberg equilibrium (HWE) test, linkage disequilibrium (LD) computation, haplotype reconstruction, and SNP (or haplotype)-phenotype association assessment. It is well suited to a case-control association study for the unrelated population. |
| Keywords:
SNP; haplotype; haplotype block; disease association |
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