PublisherDOIYearVolumeIssuePageTitleAuthor(s)Link
Genomics & Informatics10.5808/gi.2018.16.4.e342018164e34RNA-Seq De Novo Assembly and Differential Transcriptome Analysis of Korean Medicinal Herb Cirsium japonicum var. spinossimumNeha Samir Roy, Jung-A Kim, Ah-Young Choi, Yong-Wook Ban, Nam-Il Park, Kyong-Cheul Park, Hee-sun Yang, Ik-Young Choi, Soonok Kimhttp://genominfo.org/upload/pdf/gi-2018-16-4-e34.pdf, http://genominfo.org/journal/view.php?doi=10.5808/GI.2018.16.4.e34, http://genominfo.org/upload/pdf/gi-2018-16-4-e34.pdf
PLoS ONE10.1371/journal.pone.0062460201384e62460Simultaneous Transcriptome Analysis of Sorghum and Bipolaris sorghicola by Using RNA-seq in Combination with De Novo Transcriptome AssemblyTakayuki Yazawa, Hiroyuki Kawahigashi, Takashi Matsumoto, Hiroshi Mizunohttp://dx.plos.org/10.1371/journal.pone.0062460
Agronomy10.3390/agronomy703005320177353Characterisation of Faba Bean (Vicia faba L.) Transcriptome Using RNA-Seq: Sequencing, De Novo Assembly, Annotation, and Expression AnalysisShivraj Braich, Shimna Sudheesh, John Forster, Sukhjiwan Kaurhttp://www.mdpi.com/2073-4395/7/3/53/pdf
GigaScience10.1093/gigascience/giz039201985De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblersMartin Hölzer, Manja Marzhttp://academic.oup.com/gigascience/article-pdf/8/5/giz039/28600023/giz039.pdf
PLoS ONE10.1371/journal.pone.0092239201494e92239RNA-Seq Analysis Using De Novo Transcriptome Assembly as a Reference for the Salmon Louse Caligus rogercresseyiCristian Gallardo-Escárate, Valentina Valenzuela-Muñoz, Gustavo Nuñez-Acuñahttp://dx.plos.org/10.1371/journal.pone.0092239
PLOS ONE10.1371/journal.pone.018518220171211e0185182RNA-Seq de novo assembly and differential transcriptome analysis of the nematode Ascaridia galli in relation to in vivo exposure to flubendazoleMihaela M. Martis, Behdad Tarbiat, Eva Tydén, Désirée S. Jansson, Johan Höglundhttp://dx.plos.org/10.1371/journal.pone.0185182
PLoS ONE10.1371/journal.pone.0103567201498e103567De Novo Assembly of the Perennial Ryegrass Transcriptome Using an RNA-Seq StrategyJacqueline D. Farrell, Stephen Byrne, Cristiana Paina, Torben Asphttp://dx.plos.org/10.1371/journal.pone.0103567
PLoS ONE10.1371/journal.pone.01124872014911e112487RNA-Seq Analysis of Quercus pubescens Leaves: De Novo Transcriptome Assembly, Annotation and Functional Markers DevelopmentSara Torre, Massimiliano Tattini, Cecilia Brunetti, Silvia Fineschi, Alessio Fini, Francesco Ferrini, Federico Sebastianihttp://dx.plos.org/10.1371/journal.pone.0112487
Plant Molecular Biology10.1007/s11103-011-9811-z2011773299-308RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensisZhihui Xia, Huimin Xu, Jinling Zhai, Dejun Li, Hongli Luo, Chaozu He, Xi Huanghttp://link.springer.com/content/pdf/10.1007/s11103-011-9811-z.pdf, http://link.springer.com/article/10.1007/s11103-011-9811-z/fulltext.html, http://link.springer.com/content/pdf/10.1007/s11103-011-9811-z
Heliyon10.1016/j.heliyon.2022.e10255202288e10255aTAP: automated transcriptome analysis platform for processing RNA-seq data by de novo assemblyKomwit Surachat, Todd Duane Taylor, Wanicbut Wattanamatiphot, Sukgamon Sukpisit, Kongpop Jeenkeawpiamhttps://api.elsevier.com/content/article/PII:S2405844022015432?httpAccept=text/xml, https://api.elsevier.com/content/article/PII:S2405844022015432?httpAccept=text/plain