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CrossRef Text and Data Mining |
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A ChIP-Seq Data Analysis Pipeline Based on Bioconductor Packages |
Seung-Jin Park, Jong-Hwan Kim, Byung-Ha Yoon, Seon-Young Kim |
Genomics Inform. 2017;15(1):11-18. Published online March 29, 2017 DOI: https://doi.org/10.5808/GI.2017.15.1.11 |
A ChIP-Seq Data Analysis Pipeline Based on Bioconductor Packages Analysis of ChIP-seq Data in R/Bioconductor csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows A Computational Pipeline for Cross-Species Analysis of RNA-seq Data Using R and Bioconductor From reads to regions: a Bioconductor workflow to detect differential binding in ChIP-seq data From reads to regions: a Bioconductor workflow to detect differential binding in ChIP-seq data ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data An automated analysis pipeline for a large set of ChIP-seq data: AutoChIP Data Analysis of ChIP-Seq Experiments RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing |