 |
|
Accelerating next generation sequencing data analysis: an evaluation of optimized best practices for Genome Analysis Toolkit algorithms
Karl R. Franke, Erin L. Crowgey
Genomics Inform. 2020;18(1):e10 Published online 2020 Mar 31 DOI: https://doi.org/10.5808/GI.2020.18.1.e10
|
|
Citations to this article as recorded by
 Design and implementation of a hybrid cloud system for large-scale human genomic research
Masao Nagasaki, Yayoi Sekiya, Akihiro Asakura, Ryo Teraoka, Ryoko Otokozawa, Hiroki Hashimoto, Takahisa Kawaguchi, Keiichiro Fukazawa, Yuichi Inadomi, Ken T. Murata, Yasuyuki Ohkawa, Izumi Yamaguchi, Takamichi Mizuhara, Katsushi Tokunaga, Yuji Sekiya, Tos
Human Genome Variation.2023;[Epub] CrossRef Whole-genome sequencing analysis in families with recurrent pregnancy loss: A pilot study
Tsegaselassie Workalemahu, Cecile Avery, Sarah Lopez, Nathan R. Blue, Amelia Wallace, Aaron R. Quinlan, Hilary Coon, Derek Warner, Michael W. Varner, D. Ware Branch, Lynn B. Jorde, Robert M. Silver, Sezer Acar
PLOS ONE.2023; 18(2): e0281934. CrossRef Accelerating genomic workflows using NVIDIA Parabricks
Kyle A. O’Connell, Zelaikha B. Yosufzai, Ross A. Campbell, Collin J. Lobb, Haley T. Engelken, Laura M. Gorrell, Thad B. Carlson, Josh J. Catana, Dina Mikdadi, Vivien R. Bonazzi, Juergen A. Klenk
BMC Bioinformatics.2023;[Epub] CrossRef Investigating genes associated with cardiovascular disease among heart failure patients for translational research and precision medicine
Zeeshan Ahmed, Saman Zeeshan, Nicholas Persaud, William Degroat, Habiba Abdelhalim, Bruce T. Liang
Clinical and Translational Discovery.2023;[Epub] CrossRef Investigating underlying human immunity genes, implicated diseases and their relationship to COVID-19
Zeeshan Ahmed, Eduard Gibert Renart, Saman Zeeshan
Personalized Medicine.2022; 19(3): 229. CrossRef Proposal of Smith-Waterman algorithm on FPGA to accelerate the forward and backtracking steps
Fabio F. de Oliveira, Leonardo A. Dias, Marcelo A. C. Fernandes, Slavisa Jovanovic
PLOS ONE.2022; 17(6): e0254736. CrossRef Accuracy benchmark of the GeneMind GenoLab M sequencing platform for WGS and WES analysis
Chaoyang Li, Xue Fan, Xin Guo, Yongfeng Liu, Miao Wang, Xiao Chao Zhao, Ping Wu, Qin Yan, Lei Sun
BMC Genomics.2022;[Epub] CrossRef A GPU-accelerated compute framework for pathogen genomic variant identification to aid genomic epidemiology of infectious disease: a malaria case study
Giovanna Carpi, Lev Gorenstein, Timothy T Harkins, Mehrzad Samadi, Pankaj Vats
Briefings in Bioinformatics.2022;[Epub] CrossRef Ten quick tips for biomarker discovery and validation analyses using machine learning
Ramon Diaz-Uriarte, Elisa Gómez de Lope, Rosalba Giugno, Holger Fröhlich, Petr V. Nazarov, Isabel A. Nepomuceno-Chamorro, Armin Rauschenberger, Enrico Glaab, Francis Ouellette
PLOS Computational Biology.2022; 18(8): e1010357. CrossRef de novo variant calling identifies cancer mutation signatures in the 1000 Genomes Project
Jeffrey K. Ng, Pankaj Vats, Elyn Fritz‐Waters, Stephanie Sarkar, Eleanor I. Sams, Evin M. Padhi, Zachary L. Payne, Shawn Leonard, Marc A. West, Chandler Prince, Lee Trani, Marshall Jansen, George Vacek, Mehrzad Samadi, Timothy T. Harkins, Craig Pohl, Tych
Human Mutation.2022; 43(12): 1979. CrossRef Practical guide for managing large-scale human genome data in research
Tomoya Tanjo, Yosuke Kawai, Katsushi Tokunaga, Osamu Ogasawara, Masao Nagasaki
Journal of Human Genetics.2021; 66(1): 39. CrossRef Comparative Transcriptome Analysis of Key Genes and Pathways Activated in Response to Fat Deposition in Two Sheep Breeds With Distinct Tail Phenotype
Wei Zhang, Mengsi Xu, Juanjuan Wang, Shiyin Wang, Xinhua Wang, Jingquan Yang, Lei Gao, Shangquan Gan
Frontiers in Genetics.2021;[Epub] CrossRef Genomics pipelines to investigate susceptibility in whole genome and exome sequenced data for variant discovery, annotation, prediction and genotyping
Zeeshan Ahmed, Eduard Gibert Renart, Saman Zeeshan
PeerJ.2021; 9: e11724. CrossRef JWES: a new pipeline for whole genome/exome sequence data processing, management, and gene‐variant discovery, annotation, prediction, and genotyping
Zeeshan Ahmed, Eduard Gibert Renart, Deepshikha Mishra, Saman Zeeshan
FEBS Open Bio.2021; 11(9): 2441. CrossRef Applications and challenges of high performance computing in genomics
Meiye Jiang, Congfan Bu, Jingyao Zeng, Zhenglin Du, Jingfa Xiao
CCF Transactions on High Performance Computing.2021; 3(4): 344. CrossRef Application of Restriction Site-Associated DNA Sequencing (RAD-Seq) for Copy Number Variation and Triploidy Detection in Human
Jian-Chun He, Shao-Ying Li, Wen-Zhi He, Jia-Jia Xian, Xiao-Yan Ma, Yan-Chao Wang, Min-Cong Zhang, Guo-Xin Ye, Bo Liang, Qin Xia, Qing Li
Cytogenetic and Genome Research.2021; 161(8-9): 406. CrossRef
|