The Impact of Transposable Elements in Genome Evolution and Genetic Instability and Their Implications in Various Diseases
Selvam Ayarpadikannan, Heui-Soo Kim
Genomics Inform. 2014;12(3):98-104.   Published online 2014 Sep 30     DOI:
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Transposable element activation promotes neurodegeneration in a Drosophila model of Huntington's disease
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Candidate vectors of horizontal transfer of BovB retrotransposon
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Karolina Hanusek, Sławomir Poletajew, Piotr Kryst, Agnieszka Piekiełko-Witkowska, Joanna Bogusławska
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Dhawal Jain, Chong Chu, Burak Han Alver, Soohyun Lee, Eunjung Alice Lee, Peter J Park, Birol Inanc
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Heliyon.2021; 7(1): e06029.     CrossRef
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Kayla J. Rayford, Ayorinde Cooley, Jelonia T. Rumph, Ashutosh Arun, Girish Rachakonda, Fernando Villalta, Maria F. Lima, Siddharth Pratap, Smita Misra, Pius N. Nde
International Journal of Molecular Sciences.2021; 22(5): 2373.     CrossRef
An old weapon with a new function: PIWI-interacting RNAs in neurodegenerative diseases
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Evolution, Medicine, and Public Health.2021; 9(1): 78.     CrossRef
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International Journal of Molecular Sciences.2020; 21(3): 1119.     CrossRef
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Swapnil S. Parhad, Tianxiong Yu, Gen Zhang, Nicholas P. Rice, Zhiping Weng, William E. Theurkauf
Cell Reports.2020; 30(8): 2672.     CrossRef
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Genome.2020; 63(8): 365.     CrossRef
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Molecular Therapy - Nucleic Acids.2020; 21: 108.     CrossRef
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Chanachai Sae-Lee, Julien De Biasi, Natassia Robinson, Timothy M. Barrow, John C. Mathers, Georgios Koutsidis, Hyang-Min Byun, Ruslan Kalendar
PLOS ONE.2020; 15(6): e0234578.     CrossRef
Potential of transposon-mediated cellular reprogramming towards cell-based therapies
Dharmendra Kumar, Taruna Anand, Thirumala R Talluri, Wilfried A Kues
World Journal of Stem Cells.2020; 12(7): 527.     CrossRef
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Aging and disease.2020; 11(4): 851.     CrossRef
Border collies of the genome: domestication of an autonomous retrovirus-like transposon
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Non-coding RNA Research.2019; 4(2): 69.     CrossRef
Horizontal transfer of a retrotransposon between parasitic nematodes and the common shrew
Sonja M. Dunemann, James D. Wasmuth
Mobile DNA.2019;[Epub]     CrossRef
Rapid evolution and conserved function of the piRNA pathway
Swapnil S. Parhad, William E. Theurkauf
Open Biology.2019;[Epub]     CrossRef
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Mammalian Genome.2019; 30(9-10): 289.     CrossRef
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Yun Jiang, Wei Zong, Shaoqing Ju, Rongrong Jing, Ming Cui
Journal of Medical Genetics.2019; 56(10): 639.     CrossRef
Biomarker potential of repetitive-element transcriptome in lung cancer
Macarena Arroyo, Rocío Bautista, Rafael Larrosa, Manuel Ángel Cobo, M. Gonzalo Claros
PeerJ.2019; 7: e8277.     CrossRef
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Harry Lesmana, Lisa Dyer, Xia Li, James Denton, Jenna Griffiths, Satheesh Chonat, Katie G. Seu, Matthew M. Heeney, Kejian Zhang, Robert J. Hopkin, Theodosia A. Kalfa
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Sina-Elisabeth Ben Ali, Alexandra Schamann, Stefanie Dobrovolny, Alexander Indra, Sarah Zanon Agapito-Tenfen, Rupert Hochegger, Alexander G. Haslberger, Christian Brandes
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DNA methylation and socioeconomic status in a Mexican-American birth cohort
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Human copy number variants are enriched in regions of low mappability
Jean Monlong, Patrick Cossette, Caroline Meloche, Guy Rouleau, Simon L Girard, Guillaume Bourque
Nucleic Acids Research.2018; 46(14): 7236.     CrossRef
KAP1 facilitates reinstatement of heterochromatin after DNA replication
Suk Min Jang, Annamaria Kauzlaric, Jean-Pierre Quivy, Julien Pontis, Benjamin Rauwel, Andrea Coluccio, Sandra Offner, Julien Duc, Priscilla Turelli, Geneviève Almouzni, Didier Trono
Nucleic Acids Research.2018; 46(17): 8788.     CrossRef
Transposable Elements in Human Cancer: Causes and Consequences of Deregulation
Sumadi Anwar, Wahyu Wulaningsih, Ulrich Lehmann
International Journal of Molecular Sciences.2017; 18(5): 974.     CrossRef
Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans Species
K.M. Laricchia, S. Zdraljevic, D.E. Cook, E.C. Andersen
Molecular Biology and Evolution.2017; 34(9): 2187.     CrossRef
Somatizing the transposons action
Elgion L. S. Loreto, Camila Moura Pereira
Mobile Genetic Elements.2017; 7(3): 1.     CrossRef
Frequency of Alu insertions within the ACE and PR loci in Northwestern Mexicans
Hilda P. Navarrete, Linda H. Soler, Rosa E. Mares, Marco A. Ramos
BMC Research Notes.2017;[Epub]     CrossRef
Transposons: Moving Forward from Preclinical Studies to Clinical Trials
Jaitip Tipanee, Thierry VandenDriessche, Marinee K. Chuah
Human Gene Therapy.2017; 28(11): 1087.     CrossRef
Useful parasites: the evolutionary biology and biotechnology applications of transposable elements
Journal of Genetics.2016; 95(4): 1039.     CrossRef
Coevolution mechanisms that adapt viruses to genetic code variations implemented in their hosts
Journal of Genetics.2016; 95(1): 3.     CrossRef
The botrydial biosynthetic gene cluster of Botrytis cinerea displays a bipartite genomic structure and is positively regulated by the putative Zn(II)2Cys6 transcription factor BcBot6
Antoine Porquier, Guillaume Morgant, Javier Moraga, Bérengère Dalmais, Isabelle Luyten, Adeline Simon, Jean-Marc Pradier, Joëlle Amselem, Isidro González Collado, Muriel Viaud
Fungal Genetics and Biology.2016; 96: 33.     CrossRef
Structural Variation ofAluElement and Human Disease
Songmi Kim, Chun-Sung Cho, Kyudong Han, Jungnam Lee
Genomics & Informatics.2016; 14(3): 70.     CrossRef
Maternal phthalate exposure during pregnancy is associated with DNA methylation of LINE-1 and Alu repetitive elements in Mexican-American children
Karen Huen, Antonia M. Calafat, Asa Bradman, Paul Yousefi, Brenda Eskenazi, Nina Holland
Environmental Research.2016; 148: 55.     CrossRef
DNA methylation of LINE-1 and Alu repetitive elements in relation to sex hormones and pubertal timing in Mexican-American children
Karen Huen, Kim Harley, Katherine Kogut, Stephen Rauch, Brenda Eskenazi, Nina Holland
Pediatric Research.2016; 79(6): 855.     CrossRef
Accumulation of transposable elements inHoxgene clusters during adaptive radiation ofAnolislizards
Nathalie Feiner
Proceedings of the Royal Society B: Biological Sciences.2016; 283(1840): 20161555.     CrossRef
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Bhavna S. Paratala, Sonia C. Dolfi, Hossein Khiabanian, Lorna Rodriguez-Rodriguez, Shridar Ganesan, Kim M. Hirshfield
Biomarkers in Cancer.2016; 8s1: BIC.S34417.     CrossRef
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Antonio Agostini, Ludmila Gorunova, Bodil Bjerkehagen, Ingvild Lobmaier, Sverre Heim, Ioannis Panagopoulos
Oncology Letters.2016; 12(3): 1701.     CrossRef
Age-related reduction of antibody response against the human endogenous retrovirus K envelope in women
Hyoung Jin Kim, Byung-In Moon, Jun Woo Lee, Seung Cheol Kim, Hong-Jin Kim
Oncotarget.2016; 7(14): 17327.     CrossRef
Diagnostic approach for genetic causes of intellectual disability
Shin-Young Yim
Journal of Genetic Medicine.2015; 12(1): 6.     CrossRef
Mobile DNA Elements: The Seeds of Organic Complexity on Earth
Laleh Habibi, Mehrdad Pedram, Akbar AmirPhirozy, Khadijeh Bonyadi
DNA and Cell Biology.2015; 34(10): 597.     CrossRef
Composition and evolutionary importance of transposable elements in humans and primates
Hee-Eun Lee, Jungwoo Eo, Heui-Soo Kim
Genes & Genomics.2015; 37(2): 135.     CrossRef
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Wonyong Kim, Jeong-Jin Park, David R. Gang, Tobin L. Peever, Weidong Chen
Eukaryotic Cell.2015; 14(11): 1102.     CrossRef