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Original article

September 27, 2023


Unraveling the hypoxia modulating potential of VEGF family genes in pan-cancer
So-Hyun Bae, Taewon Hwang, Mi-Ryung Han
Genomics Inform. 2023;21(4):e44.

Tumor hypoxia, oxygen deprivation state, occurs in most cancers and promotes angiogenesis, enhancing the potential for metastasis. The vascular endothelial growth factor (VEGF) family genes play crucial roles in tumorigenesis...

Original article

December 29, 2023


Identification of key genes and functional enrichment analysis of liver fibrosis in nonalcoholic fatty liver disease through weighted gene co-expression network analysis
Yue Hu, Jun Zhou
Genomics Inform. 2023;21(4):e45.

Nonalcoholic fatty liver disease (NAFLD) is a common type of chronic liver disease, with severity levels ranging from nonalcoholic fatty liver to nonalcoholic steatohepatitis (NASH). The extent of liver fibrosis...

Original article

December 29, 2023


Expression of anoctamin 7 (ANO7) is associated with poor prognosis and mucin 2 (MUC2) in colon adenocarcinoma: a study based on TCGA data
Chen Chen, Siripat Aluksanasuwan, Keerakarn Somsuan
Genomics Inform. 2023;21(4):e46.

Colon adenocarcinoma (COAD) is the predominant type of colorectal cancer. Early diagnosis and treatment can significantly improve the prognosis of COAD patients. Anoctamin 7 (ANO7), an anion channel protein, has...

Original article

December 29, 2023


Genome-wide SNP analysis provides insights into the XX/XY sex-determination system in silver barb (Barbonymus gonionotus)
Visarut Chailertrit, Thitipong Panthum, Lalida Kongkaew, Piangjai Chalermwong, Worapong Singchat, Syed Farhan Ahmad, Ekaphan Kraichak, Narongrit Muangmai, Prateep Duengkae, Surin Peyachoknagul, et al.
Genomics Inform. 2023;21(4):e47.

Silver barb (Barbonymus gonionotus) is among the most economically important freshwater fish species in Thailand. It ranks fourth in economic value and third in production weight for fisheries and culture...

Original article

December 29, 2023


A genomic and bioinformatic-based approach to identify genetic variants for liver cancer across multiple continents
Muhammad Ma’ruf, Lalu Muhammad Irham, Wirawan Adikusuma, Made Ary Sarasmita, Sabiah Khairi, Barkah Djaka Purwanto, Rockie Chong, Maulida Mazaya, Lalu Muhammad Harmain Siswanto
Genomics Inform. 2023;21(4):e48.

Liver cancer is the fourth leading cause of death worldwide. Well-known risk factors include hepatitis B virus and hepatitis C virus, along with exposure to aflatoxins, excessive alcohol consumption, obesity,...

Original article

December 29, 2023


Comparative analysis of HiSeq3000 and BGISEQ-500 sequencing platform over whole genome sequencing metagenomics data
Animesh Kumar, Espen M. Robertsen, Nils P. Willassen, Juan Fu, Erik Hjerde
Genomics Inform. 2023;21(4):e49.

Recent advances in sequencing technologies and platforms have enabled to generate metagenomics sequences using different sequencing platforms. In this study, we analyzed and compared shotgun metagenomic sequences generated by HiSeq3000...

Original article

December 29, 2023


An analysis of the waning effect of COVID-19 vaccinations
Bogyeom Lee, Hanbyul Song, Catherine Apio, Kyulhee Han, Jiwon Park, Zhe Liu, Hu Xuwen, Taesung Park
Genomics Inform. 2023;21(4):e50.

Vaccine development is one of the key efforts to control the spread of coronavirus disease 2019 (COVID-19). However, it has become apparent that the immunity acquired through vaccination is not...

Genome archive

December 29, 2023


Description of eight new mitochondrial genomes for the genus Neoarius and phylogenetic considerations for the family Ariidae (Siluriformes)
Luiz Guilherme Pereira Pimentel, Iuri Batista da Silva, Igor Henrique Rodrigues-Oliveira, Rubens Pasa, Fabiano Bezerra Menegídio, Karine Frehner Kavalco
Genomics Inform. 2023;21(4):e51.

The genus Neoarius, known as marine catfish, is a group of the family Ariidae, composed of 10 species found in Oceania. None of the species in this genus have their...

Application note

December 29, 2023


Comparison of microbial molecular diagnosis efficiency within unstable template metagenomic DNA samples between qRT-PCR and chip-based digital PCR platforms
Dongwan Kim, Junhyeon Jeon, Minseo Kim, Jinuk Jeong, Young Mok Heo, Dong-Geol Lee, Dong Keon Yon, Kyudong Han
Genomics Inform. 2023;21(4):e52.

Accurate and efficient microbial diagnosis is crucial for effective molecular diagnostics, especially in the field of human healthcare. The gold standard equipment widely employed for detecting specific microorganisms in molecular...
Current Issue
Volume 21(4); Dec 2023
Unraveling the hypoxia modulating potential of VEGF family genes in pan-cancer
So-Hyun Bae, Taewon Hwang, Mi-Ryung Han
Genomics Inform. 2023;21(4):e44.

Original article

September 27, 2023
Identification of key genes and functional enrichment analysis of liver fibrosis in nonalcoholic fatty liver disease through weighted gene co-expression network analysis
Yue Hu, Jun Zhou
Genomics Inform. 2023;21(4):e45.

Original article

December 29, 2023
Expression of anoctamin 7 (ANO7) is associated with poor prognosis and mucin 2 (MUC2) in colon adenocarcinoma: a study based on TCGA data
Chen Chen, Siripat Aluksanasuwan, Keerakarn Somsuan
Genomics Inform. 2023;21(4):e46.

Original article

December 29, 2023
Genome-wide SNP analysis provides insights into the XX/XY sex-determination system in silver barb (Barbonymus gonionotus)
Visarut Chailertrit, Thitipong Panthum, Lalida Kongkaew, Piangjai Chalermwong, Worapong Singchat, Syed Farhan Ahmad, Ekaphan Kraichak, Narongrit Muangmai, Prateep Duengkae, Surin Peyachoknagul, et al.
Genomics Inform. 2023;21(4):e47.

Original article

December 29, 2023
A genomic and bioinformatic-based approach to identify genetic variants for liver cancer across multiple continents
Muhammad Ma’ruf, Lalu Muhammad Irham, Wirawan Adikusuma, Made Ary Sarasmita, Sabiah Khairi, Barkah Djaka Purwanto, Rockie Chong, Maulida Mazaya, Lalu Muhammad Harmain Siswanto
Genomics Inform. 2023;21(4):e48.

Original article

December 29, 2023
Comparative analysis of HiSeq3000 and BGISEQ-500 sequencing platform over whole genome sequencing metagenomics data
Animesh Kumar, Espen M. Robertsen, Nils P. Willassen, Juan Fu, Erik Hjerde
Genomics Inform. 2023;21(4):e49.

Original article

December 29, 2023
An analysis of the waning effect of COVID-19 vaccinations
Bogyeom Lee, Hanbyul Song, Catherine Apio, Kyulhee Han, Jiwon Park, Zhe Liu, Hu Xuwen, Taesung Park
Genomics Inform. 2023;21(4):e50.

Original article

December 29, 2023
Description of eight new mitochondrial genomes for the genus Neoarius and phylogenetic considerations for the family Ariidae (Siluriformes)
Luiz Guilherme Pereira Pimentel, Iuri Batista da Silva, Igor Henrique Rodrigues-Oliveira, Rubens Pasa, Fabiano Bezerra Menegídio, Karine Frehner Kavalco
Genomics Inform. 2023;21(4):e51.

Genome archive

December 29, 2023
Comparison of microbial molecular diagnosis efficiency within unstable template metagenomic DNA samples between qRT-PCR and chip-based digital PCR platforms
Dongwan Kim, Junhyeon Jeon, Minseo Kim, Jinuk Jeong, Young Mok Heo, Dong-Geol Lee, Dong Keon Yon, Kyudong Han
Genomics Inform. 2023;21(4):e52.

Application note

December 29, 2023

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