1. Angov E. Codon usage: nature's roadmap to expression and folding of proteins. Biotechnol J 2011;6:650–659. PMID:
21567958.
2. Welch M, Govindarajan S, Ness JE, Villalobos A, Gurney A, Minshull J,
et al. Design parameters to control synthetic gene expression in Escherichia coli. PLoS One 2009;4:e7002. PMID:
19759823.
3. Plotkin JB, Robins H, Levine AJ. Tissue-specific codon usage and the expression of human genes. Proc Natl Acad Sci U S A 2004;101:12588–12591. PMID:
15314228.
4. Mazumder TH, Chakraborty S, Paul P. A cross talk between codon usage bias in human oncogenes. Bioinformation 2014;10:256–262. PMID:
24966531.
5. Novoa EM, Ribas de Pouplana L. Speeding with control: codon usage, tRNAs, and ribosomes. Trends Genet 2012;28:574–581. PMID:
22921354.
6. Qian W, Yang JR, Pearson NM, Maclean C, Zhang J. Balanced codon usage optimizes eukaryotic translational efficiency. PLoS Genet 2012;8:e1002603. PMID:
22479199.
7. Dimitrieva S, Anisimova M. Unraveling patterns of site-to-site synonymous rates variation and associated gene properties of protein domains and families. PLoS One 2014;9:e95034. PMID:
24896293.
8. Lavner Y, Kotlar D. Codon bias as a factor in regulating expression via translation rate in the human genome. Gene 2005;345:127–138. PMID:
15716084.
9. Zhou Y, Ma BG, Zhang HY. Human oncogene tissue-specific expression level significantly correlates with sequence compositional features. FEBS Lett 2007;581:4361–4365. PMID:
17716662.
10. Sémon M, Lobry JR, Duret L. No evidence for tissue-specific adaptation of synonymous codon usage in humans. Mol Biol Evol 2006;23:523–529. PMID:
16280544.
11. Hajjari M, Khoshnevisan A, Behmanesh M. Compositional features are potentially involved in the regulation of gene expression of tumor suppressor genes in human tissues. Gene 2014;553:126–129. PMID:
25303870.
12. Ma L, Cui P, Zhu J, Zhang Z, Zhang Z. Translational selection in human: more pronounced in housekeeping genes. Biol Direct 2014;9:17. PMID:
25011537.
13. Portt L, Norman G, Clapp C, Greenwood M, Greenwood MT. Anti-apoptosis and cell survival: a review. Biochim Biophys Acta 2011;1813:238–259. PMID:
20969895.
14. Levy JP, Muldoon RR, Zolotukhin S, Link CJ Jr. Retroviral transfer and expression of a humanized, red-shifted green fluorescent protein gene into human tumor cells. Nat Biotechnol 1996;14:610–614. PMID:
9630952.
15. Calkhoven CF, Müller C, Leutz A. Translational control of gene expression and disease. Trends Mol Med 2002;8:577–583. PMID:
12470991.
16. Dittmar KA, Goodenbour JM, Pan T. Tissue-specific differences in human transfer RNA expression. PLoS Genet 2006;2:e221. PMID:
17194224.
17. Comeron JM. Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence. Genetics 2004;167:1293–1304. PMID:
15280243.
18. Williford A, Demuth JP. Gene expression levels are correlated with synonymous codon usage, amino acid composition, and gene architecture in the red flour beetle, Tribolium castaneum. Mol Biol Evol 2012;29:3755–3766. PMID:
22826459.
19. Duret L. tRNA gene number and codon usage in the
C. elegans genome are co-adapted for optimal translation of highly expressed genes. Trends Genet 2000;16:287–289. PMID:
10858656.
20. Heizer EM Jr, Raiford DW, Raymer ML, Doom TE, Miller RV, Krane DE. Amino acid cost and codon-usage biases in 6 prokaryotic genomes: a whole-genome analysis. Mol Biol Evol 2006;23:1670–1680. PMID:
16754641.
21. Raiford DW, Heizer EM Jr, Miller RV, Akashi H, Raymer ML, Krane DE. Do amino acid biosynthetic costs constrain protein evolution in
Saccharomyces cerevisiae? J Mol Evol 2008;67:621–630. PMID:
18937004.
23. Akashi H, Gojobori T. Metabolic efficiency and amino acid composition in the proteomes of
Escherichia coli and
Bacillus subtilis. Proc Natl Acad Sci U S A 2002;99:3695–3700. PMID:
11904428.
24. Zhang FX, Rubin R, Rooney TA. N-Methyl-D-aspartate inhibits apoptosis through activation of phosphatidylinositol 3-kinase in cerebellar granule neurons: a role for insulin receptor substrate-1 in the neurotrophic action of n-methyl-D-aspartate and its inhibition by ethanol. J Biol Chem 1998;273:26596–26602. PMID:
9756898.
25. Verzola D, Fama A, Villaggio B, Di Rocco M, Simonato A, D'Amato E,
et al. Lysine triggers apoptosis through a NADPH oxidase-dependent mechanism in human renal tubular cells. J Inherit Metab Dis 2012;35:1011–1019. PMID:
22403019.